Notes, summaries, assignments, exams, and problems for Chemistry

The Krebs Cycle

The Krebs cycle, also known as the Citric Acid Cycle, is an amphibolic pathway because:

• It facilitates the degradation of Acetyl-CoA.
• Its intermediate compounds serve as precursors for other synthetic processes.

Stages of the Krebs Cycle

The cycle is divided into the following stages:

1. Formation of Citric Acid

   Citric acid is formed from oxaloacetic acid and Acetyl-CoA.

   • Modifications: Oxaloacetic acid + Acetyl-CoA → Citric acid
   • Inputs/Outputs: Enters H₂O and Acetyl-CoA

2. Isomerization of Citric Acid to Isocitric Acid

   • Modifications: Citric acid → Isocitric acid
   • Inputs/Outputs: None

3. Oxidation of Isocitric Acid

   Isocitric acid is oxidized, reducing NAD⁺ to NADH, forming alpha-ketoglutarate, and releasing CO₂.

   • Modifications: Isocitric acid →

... Continue reading "Krebs Cycle: Cellular Energy Production Pathway" »

Defrosting is essential in refrigeration systems to remove ice accumulation on evaporators, which reduces efficiency and cooling capacity.

Natural Defrosting

This method is typically used in refrigerated spaces operating above +2°C. It involves stopping the refrigeration system (compressor and fans) for a period, allowing the warmer ambient air within the refrigerated space to melt the ice accumulated on the evaporator.

In low-temperature facilities for freezing and storage of frozen products, based on forced-air evaporators, it becomes necessary to create additional heat for defrosting to melt the ice.

Water Spray Defrosting

This method involves spraying water under pressure onto the ice accumulated on the evaporator. The water melts the ice and... Continue reading "Refrigeration Defrost Methods" »

Hemoglobin Iron Environment and Geometry

The iron ion (Fe) in Hemoglobin (Hb) is in a square planar environment, bonded to four nitrogen (N) atoms of the porphyrin ring. The fifth coordination position is bound to a nitrogen atom from a histidine residue (perpendicular to the plane), and the sixth position binds O₂ in oxyhemoglobin. When oxygenated, the coordination geometry around the iron is essentially octahedral. In contrast, deoxygenated Hb has a five-coordinate, square pyramidal geometry, as the sixth position is vacant.

Role of Magnesium and Calcium Competition

Magnesium (Mg) is extremely important. It plays a role related to the Na⁺/K⁺ pump; the interior of the cell requires large amounts of K⁺ and low amounts of Na⁺. Mg facilitates the... Continue reading "Iron and Copper Roles in Biological Oxygen Transport" »

The Molecular Structure of Water

Water exhibits a unique physical behavior because the two electrons shared in the molecule (from two hydrogen atoms) are unevenly shared, shifting toward the oxygen atom. This creates a negative pole at the oxygen atom and two positive poles where the hydrogen atoms are located. Therefore, water is fundamentally a bipolar molecule.

Key Physicochemical Properties of Water

Water possesses several critical properties:

1. High Cohesive Force: Strong attraction between molecules due to hydrogen bonds.
2. High Adhesion Strength: Water molecules have a great capacity to adhere to the walls of small-diameter tubes, allowing them to climb against gravity (a phenomenon known as capillarity).
3. High Surface Tension: Its surface resists

... Continue reading "The Essential Chemistry of Water and Mineral Salts in Biology" »

Atoms, Molecules, and Ions

Atoms: Electrically balanced particles consisting of one positively charged center called the nucleus, surrounded by a cloud of negatively charged particles called electrons, which exactly balance the nuclear charge.

Molecules: Electrically balanced particles with more than one positive center (nuclei). Molecules are sets of bonded atoms that act as a unit.

Ions: Atoms (or groups of atoms) with unbalanced charges.

The number of protons determines the number of electrons necessary to balance the atom's charge. Neutrons are the cementing material in the nucleus. The force between protons and neutrons is called the strong nuclear interaction. Number of protons = ATOMIC NUMBER of the atom (Z)

The atomic number is also given... Continue reading "Understanding Atoms, Molecules, and Ions: Structure and Properties" »

1. True or False Statements

a) True

b) True

c) True / FALSE, if the hypothesis has not been demonstrated.

2. Measurement Units and Properties

a) Size: m³ is a unit of volume and can be used in moderation.

b) Scalability: It does not scale; it is not a unit of restraint.

c) Magnitude Measurement: Magnitude can be measured in K (Kelvin).

3. Units of Measurement

• Length - Meter - m
• Mass - Kilogram - kg
• Time - Second - s
• Temperature - Kelvin - K
• Intensity of Current - Ampere - A

4. Unit Conversions

a) 2.5 mm x (1 m / 1,000 mm) = 0.0025 m = 2.5 x 10^-3 m

b) 0.53 mg x (1 g / 1,000 mg) x (1 kg / 1,000 g) = 0.00000053 kg = 5.3 x 10^-7 kg

c) 3 h x (3,600 s / 1 h) = 10,800 s = 1.08 x 10⁴ s

5. Calculations with Significant Figures

a) 8.34 x 3.1456 = 26.234304 = 26.2

b) 4.00... Continue reading "Understanding Physical Quantities and States of Matter" »

Introduction to Chemistry

Chemistry is the science of matter and its properties, including its composition, structure, physical properties, and reactivity. It involves observation, knowledge, and reasoning to deduce general principles and laws.

Types of Chemistry

1. Experimental:

• Natural: Physics, Chemistry, Biology
• Human: Geography, Politics, History

Formal: Mathematics and Logic

The scientific method involves observation, gathering information, forming a hypothesis, conducting experiments (with independent, dependent, and control variables), analyzing results, and developing a theory or law.

Conversions:

• 1 lb = 0.454 kg
• 1 in = 2.54 cm
• 1 in² = 6.45 cm²

Chemical Compounds

• Hydroacids (H + NM)
• Binary Salts (M + NM)
• Hydrides (M + H)
• Non-metal Oxides (NM + O)
• Metal

... Continue reading "Understanding Chemistry: Formulas, Reactions, and Concepts" »

Planck's Theory

The energy emitted by radiation is directly proportional to the frequency of radiation.

Bohr Model

Postulates:

1. Electrons revolve around the nucleus in circular orbits without emitting energy.
2. Electrons are only allowed in orbits where their angular momentum is a multiple of h/2π.
3. When an electron moves between orbits, the energy difference is emitted as radiation.

Bohr determined the radius, energy, and location of electrons within these orbits.

Sommerfeld's Modifications

Sommerfeld modified the Bohr model to include elliptical orbits. He introduced a second quantum number, which depends on the first and describes the orbit's shape.

l = 0 ... (n-1)

Zeeman Effect: When an atomic spectrum is subjected to a magnetic field, spectral lines... Continue reading "Atomic Structure and Quantum Mechanics" »

Fundamental Concepts of Mixtures

Heterogeneous Mixtures

Do not present a uniform appearance to the naked eye. Their components are visibly distinct.

Homogeneous Mixtures (Solutions)

Present a uniform appearance to the naked eye. Their components are indistinguishable, even with a microscope.

Colloids

Mixtures that appear uniform to the naked eye but whose components can be distinguished with a microscope.

Dissolution (Solution Formation)

The process of forming a homogeneous mixture where a major component (the solvent) dissolves one or more other substances (the solutes).

Concentration

A measure indicating the amount of solute dissolved in a given quantity of solvent or solution.

Solubility

The maximum quantity of a substance (solute) that can be dissolved... Continue reading "Chemistry Mixture Separation Methods and Definitions" »

Fundamental Concepts of Atomic Structure

• Atomic Orbital: The region of space around the nucleus in which there is a high probability of finding an electron with a particular energy.
• Effective Nuclear Charge ($Z_{eff}$): The net positive charge experienced by an electron in a multi-electron atom. It is the charge the core would have if the atom consisted only of the core and the electron considered.
• Screening (Shielding): The repulsion between electrons, which reduces the nuclear attraction experienced by outer electrons and affects their energy state.

Rules Governing Electronic Configuration

The fundamental electronic configuration is determined by three key principles:

1. Aufbau Principle (Rule of Construction): Electrons fill available atomic orbitals

... Continue reading "Atomic Structure Principles and Periodic Property Trends" »