Notes, summaries, assignments, exams, and problems for Biology

Early Foundations and Key Milestones in Plant Tissue Culture

The science of plant tissue culture originates from the discovery of the cell, followed by the postulation of cell theory. In 1838, Schleiden and Schwann proposed that the cell is the basic structural unit of all living organisms. They envisioned that a cell is capable of autonomy and, therefore, it should be possible for each cell, if given the right environment, to regenerate into a whole plant. Based on this premise, in 1902, German physiologist Gottlieb Haberlandt for the first time attempted to culture isolated single palisade cells from leaves in Knop’s salt solution enriched with sucrose. The cells remained alive for up to one month, increased in size, accumulated starch,... Continue reading "Milestones in Plant Tissue Culture Development" »

Basement Membrane Structure & Function

Covering & Lining Epithelia

Knee Joint Anatomy and Function

This document provides a detailed look at the structure, mechanics, and common clinical aspects of the knee joint.

Type of Joint

• The knee is classified as a synovial hinge joint.
• It primarily allows flexion and extension.
• A small degree of medial/lateral rotation is possible when the knee is flexed.

Bones Involved

1. Femur (thigh bone)
2. Tibia (shin bone)
3. Patella (kneecap)

The fibula is nearby but does not participate in the primary knee joint articulation.

Articulating Surfaces

• The medial and lateral femoral condyles articulate with the tibial condyles.
• The patella articulates with the femoral trochlear groove.

Main Ligaments

1. Anterior Cruciate Ligament (ACL) – Prevents anterior displacement of the tibia relative to the femur.

Plasmids pBR322 and pUC18/19

pBR322

pBR322, developed in 1977, is a foundational plasmid in molecular biology. Key features include:

• Size: ~4,361 base pairs (bp)
• Origin of Replication: Allows independent replication within bacteria.
• Selection Markers:
  • ampR: Confers ampicillin resistance.
  • tetR: Confers tetracycline resistance.
• Cloning Sites: Multiple sites for inserting foreign DNA.
• Applications: Gene cloning, expression, and manipulation.

pUC18/19

pUC18/19, derived from pBR322 in the early 1980s, simplifies cloning. Key features include:

• Size: ~2,686 bp
• Origin of Replication: High-copy-number pMB1 ori for increased yield.
• Selection Marker:
  • lacZ: Beta-galactosidase gene; enables blue/white screening for insert identification.
• Cloning Sites: Multiple cloning

I. Reflex Activity: Definition and Physiology

• Reflex Definition: An involuntary, automatic response to a peripheral stimulus, involving either motor or secretory action.
• Function: Crucial for adaptation to internal and external changes.
• Dependence: Requires the integrity of the reflex arc; disruption at any level abolishes the reflex.

II. The Reflex Arc: Components

The reflex arc consists of five essential components:

1. Receptor Organ: Transforms a stimulus into nerve impulses.
2. Afferent Neuron: Conducts the impulse to the Central Nervous System (CNS).
3. Integration Center: Typically located in the spinal cord or brainstem; processes signals via synapses.
4. Efferent (Motor) Neuron: Sends the command from the CNS to the effector.
5. Effector: The muscle or gland

1. Brain Abscess

• Gross Morphology

  Localized area of liquefactive necrosis filled with yellow pus, surrounded by a thin fibrous capsule and edematous, inflamed brain tissue.

• Pathology

  Caused by hematogenous spread of bacterial infection, direct trauma, or contiguous spread (e.g., from sinuses). Represents focal suppurative inflammation of the brain.

2. Neurinoma (Schwannoma)

• Gross Morphology

  Well-circumscribed, encapsulated globoid mass with a soft, tan “fish-flesh” appearance, often with cysts or hemorrhage. Cut surface may show yellow patches.

• Pathology

  A benign tumor of Schwann cells, often seen in cranial nerves (especially CN VIII) and associated with neurofibromatosis type 2. Grows slowly and may compress adjacent structures.

3. Fibrinous

Maxillary Radiolucent Landmarks

• Intermaxillary Suture (Incisor Region)

  Appears radiolucent (RL) with a radiopaque (RO) border. Often misinterpreted as a fracture; however, true fractures are irregular and lack a radiopaque border. Located at the midline between the two premaxillae.

• Nasal Fossa (Incisor & Canine Region)

  A pear-shaped radiolucency. Visible in the canine, incisor, and posterior regions.

• Incisive Foramen (Incisor Region)

  A radiolucency located at the midline of the palate, behind the central incisors. Differential Diagnosis: Consider an incisive canal cyst if its size exceeds 1 cm.

• Lateral Fossa (Canine Region)

  A depression appearing as a radiolucency near the canine and lateral incisor.

• Nasolacrimal Canal

  Appears radiolucent, located

Response to Orthodontic Pressure

Light Pressure (<1 second to Hours)

• Less than 1 second: PDL fluid is incompressible; alveolar bone bends, and a piezoelectric signal is generated.
• 1-2 seconds: PDL fluid is expressed; the tooth moves within the PDL space.
• 3-5 seconds: Blood flow within the PDL is partially compressed on the pressure side and dilated on the tension side.
• Minutes: Blood flow is altered, and oxygen tension begins to change.
• Hours: Metabolic changes and chemical messengers affect cellular activity.
• Less than 4 hours: Cellular differentiation begins within the PDL.
• 2 days: Tooth movement occurs as osteoclasts and osteoblasts remodel bone.

Heavy Pressure (<1 second to 7-14 days)

• Less than 1 second: PDL fluid is incompressible; alveolar

Aggressive Periodontitis: Localized vs. Generalized

This section outlines the key similarities and differences between Localized Aggressive Periodontitis (LAP) and Generalized Aggressive Periodontitis (GAP).

Localized Aggressive Periodontitis (LAP)

• Circumpubertal onset.
• Robust serum antibody response to infecting agents.
• Localized first molar/incisor presentation with interproximal attachment loss on at least two permanent teeth, one of which is a first molar.
• Lack of clinical inflammation.
• Presence of deep periodontal pockets.
• Amount of plaque inconsistent with the amount of periodontal destruction.
• Plaque forms a thin biofilm, rarely mineralizing into calculus.
• Distolabial migration and diastema formation.
• Increasing mobility of first molars.
• Sensitivity

Mineral Trioxide Aggregate (MTA) Applications

Pulp Therapy

• Pulp capping
• Furcation repair
• Strip perforation repair
• Root resorption repair
• Immature teeth
• Root end filling material

Elements of Pulp Regeneration

Therapy for exposed dental pulps using stem cells and a biofunctional scaffold, inhibiting or eliminating infection to facilitate pulp generation.

Nickel-Titanium (NiTi) Rotary Instruments

Advantages of NiTi Reciprocation

• Mimics manual movement
• Reduces risks associated with continuous rotation in curved canals

Types of Posts

1. Carbon fiber epoxy resin posts
2. Zirconia posts
3. Glass fiber reinforced posts
4. Ultra-high strength polyethylene fiber reinforced posts

Advantages of NiTi Rotary

• Gradual, evenly tapered radicular preparation
• Fewer instruments required
• Reduced