Notes, summaries, assignments, exams, and problems for Biology

Plasmids pBR322 and pUC18/19

pBR322

pBR322, developed in 1977, is a foundational plasmid in molecular biology. Key features include:

• Size: ~4,361 base pairs (bp)
• Origin of Replication: Allows independent replication within bacteria.
• Selection Markers:
  • ampR: Confers ampicillin resistance.
  • tetR: Confers tetracycline resistance.
• Cloning Sites: Multiple sites for inserting foreign DNA.
• Applications: Gene cloning, expression, and manipulation.

pUC18/19

pUC18/19, derived from pBR322 in the early 1980s, simplifies cloning. Key features include:

• Size: ~2,686 bp
• Origin of Replication: High-copy-number pMB1 ori for increased yield.
• Selection Marker:
  • lacZ: Beta-galactosidase gene; enables blue/white screening for insert identification.
• Cloning Sites: Multiple cloning

Mineral Trioxide Aggregate (MTA) Applications

Pulp Therapy

• Pulp capping
• Furcation repair
• Strip perforation repair
• Root resorption repair
• Immature teeth
• Root end filling material

Elements of Pulp Regeneration

Therapy for exposed dental pulps using stem cells and a biofunctional scaffold, inhibiting or eliminating infection to facilitate pulp generation.

Nickel-Titanium (NiTi) Rotary Instruments

Advantages of NiTi Reciprocation

• Mimics manual movement
• Reduces risks associated with continuous rotation in curved canals

Types of Posts

1. Carbon fiber epoxy resin posts
2. Zirconia posts
3. Glass fiber reinforced posts
4. Ultra-high strength polyethylene fiber reinforced posts

Advantages of NiTi Rotary

• Gradual, evenly tapered radicular preparation
• Fewer instruments required
• Reduced

Metabolic and Biochemical Processes

BMI Calculation: BMI = Kg/M². Interpretation: <25 = Normal, 25-30 = Overweight, >30 = Obese. Ethanolamine (Ethan-NH₃), Choline = N(CH₃)₃

Leptin and Adipose Tissue

Leptin is released from adipose tissue when mass is high. It travels through the blood to the arcuate nucleus, binds to neuronal cells, and activates the JAK-STAT pathway. This increases gene expression of POMC, which produces alpha-MSH (a neurotransmitter). Alpha-MSH reaches neurons connected to adipose tissue, releasing norepinephrine. Norepinephrine binds to beta-adrenergic receptors on adipose tissue, promoting an increase (via the G-protein coupled receptor pathway and activation of PKA). This leads to upregulation of UCP1 expression and... Continue reading "Metabolic Pathways and Liposome Drug Delivery" »

To sort the diversity of life using a rating system. Kingdom, phylum. sub class, super, order, sub groups, sub, genus, species, sub. Hierarchical binomial nomenclature, the greater the taxa categories. To reconstruct the phylogeny of a group uses a character that varies among members (ancestral character.) Is also used to compare outgroup (outgroup ) This is phylogenetically close, but not part of the study group. For any phylogenetic reconstruction we need to consider the characters that we use in our analysis and determine which is the primitive condition that presents the common ancestor of several. In this sense, we use the apomorphies that
refer to a derived or specialized character. In contrast, plesiomorphic, is a primitive character.

Full Crown Veneer

Indications:

• Extensive destruction from caries or trauma
• Endodontically treated teeth
• Existing restorations
• Correction for occlusal plane

Contraindications:

• Less than maximum retention
• Esthetics

Advantages:

• Strong
• High retentive quality
• Easy to obtain
• Adequate resistance form

Disadvantages:

• Removal of large amount of tooth structure
• Adverse effect on tissues
• Vitality testing not readily feasible
• Display of metal

Porcelain-Fused-to-Metal (PFM) Crown

Indications:

• Esthetics if all-ceramic is contraindicated
• Gingival involvement

Contraindications:

• Large pulp chamber
• Intact buccal wall

Advantages:

• Superior esthetics compared to complete cast crown

Disadvantages:

• Removal of substantial tooth structure
• Subject to fracture
• Difficult to obtain accurate occlusion
• Shade

Human Body and Homeostasis

Cells and Their Functions

Cytoplasm: The material between the plasma membrane and the nucleus, composed of cytosol (largely water with dissolved proteins) and cytoplasmic organelles.

• Mitochondria: Provide ATP (energy).
• Ribosomes: Sites of protein synthesis.
• Endoplasmic Reticulum: Manufactures proteins and catalyzes reactions.
• Golgi Body: Concentrates and packages proteins.
• Lysosomes: Contain digestive enzymes; degrade unwanted substances.
• Cytoskeleton: Provides structural support.
• Nucleus: Control center of the cell; contains genes.
• Centriole: Plays an active role in cell division.
• Microvilli: Increase surface area for absorption.
• Vacuole: Membrane-bound organelle that stores and excretes substances.

Plasma Membrane: Separates... Continue reading "Human Body Systems: A Comprehensive Overview" »

Benign Epithelial Lesions

Squamous Cell Papilloma

Age: Mid-age
Site: Palate, uvula, cheek, lip, tongue, gingiva
Characteristics:

• Color: White to pinkish (depending on keratinization)
• Shape: Cauliflower-like
• Surface: Rough, irregular (finger-like projections)
• Texture: Firm or soft (depending on keratinization)
• Sessile or pedunculated

Histological Features:

1. Hyperplastic stratified squamous epithelium
2. Acanthosis and hyperkeratosis
3. Intact basal layer
4. Thin central branching core of connective tissue carrying nutrition

Verruca Vulgaris (Wart)

Reactive lesion, autoinoculation
Etiology: HPV 2, 4, 6
Histological Features:

1. Intranuclear inclusion bodies
2. Koilocytes
3. Cupping effect of rete ridges
4. Granular cell layer

Keratoacanthoma

True, self-limiting lesion
Age: Older males
... Continue reading "Benign Epithelial and Mesodermal Lesions of the Oral Cavity" »

Circulatory System

Deoxygenated blood from the body returns to the right atrium of the heart through the superior and inferior vena cavae. The right atrium contracts, pushing the blood through the tricuspid valve into the right ventricle. The right ventricle contracts, pumping the deoxygenated blood through the pulmonary valve into the pulmonary artery. The pulmonary artery carries the deoxygenated blood to the lungs, where it picks up oxygen and releases carbon dioxide through the process of gas exchange. Oxygenated blood returns from the lungs to the left atrium of the heart via the pulmonary veins. The left atrium contracts, pushing the oxygenated blood through the mitral valve into the left ventricle. The left ventricle contracts, pumping... Continue reading "Understanding the Circulatory and Reproductive Systems" »

Chromosomes and DNA

Genes are contained within chromosomes, which are made of DNA and located in the cell nucleus. A chromosome contains thousands of genes. Every normal human contains 23 pairs of chromosomes, a total of 46 chromosomes.

Traits and Alleles

A trait is any gene-determined characteristic, often determined by more than one gene. Gene: A segment of DNA that controls a hereditary trait. Alleles are different versions of a gene that produce distinguishable traits in offspring. Two alleles must be present in order for a trait to appear in the offspring. One allele is provided by each parent to the offspring. When fertilization of sperm and eggs occurs, the new offspring will have 2 alleles for each gene.

Gregor Mendel's Contributions

Gregor... Continue reading "Genetics: The Basics of Heredity and Traits" »

1) Physical Barriers Against Infection

Physical barriers are crucial in preventing microbes from reaching susceptible tissues.

Cellular Contributions to Physical Barriers

At the cellular level, tightly joined cells form barriers, preventing invaders from penetrating deeper tissues.

Microbial Evasion of Physical Barriers

Pathogens may use enzymes like proteases to damage physical barriers and gain entry.

2) Layers of Human Skin

Human skin has three layers:

1. Epidermis: Outer layer containing keratin (prevents microbial entry).

2. Dermis: Middle layer with hair follicles, sweat glands, nerves, and blood vessels.

3. Hypodermis: Inner layer with fatty tissue, blood, and lymph vessels.

Significance of Keratin, Fatty Acids, and Skin Shedding

• Keratin: Tough,